Detailed information of SNP:
|
SNP ID:
sf0305832332(Gbrowse)
Chromosome: chr03 Position: 5832332 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 68.05% | 31.95% |
| All Indica | 798 | 46.49% | 53.51% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 45.72% | 54.28% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 211 | 48.82% | 51.18% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305832332 | C->T | LOC_Os03g11330(LOC_Os03g11330.1) | INTRON |