Detailed information of SNP:
|
SNP ID:
sf0305851353(Gbrowse)
Chromosome: chr03 Position: 5851353 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 72.47% | 27.53% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 475 | 22.53% | 77.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 3.05% | 96.95% |
| Tropical Japonica | 86 | 79.07% | 20.93% |
| Japonica Intermediate | 61 | 47.54% | 52.46% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305851353 | A->G | INTERGENIC | None |