Detailed information of SNP:
|
SNP ID:
sf0305878043(Gbrowse)
Chromosome: chr03 Position: 5878043 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 96.12% | 3.88% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305878043 | A->T | LOC_Os03g11420(LOC_Os03g11420.1) | INTRON |