Detailed information of SNP:
|
SNP ID:
sf0305891784(Gbrowse)
Chromosome: chr03 Position: 5891784 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 56.14% | 43.86% |
| All Indica | 766 | 98.04% | 1.96% |
| All Japonica | 496 | 0.60% | 99.40% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 357 | 98.60% | 1.40% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 199 | 98.49% | 1.51% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305891784 | A->G | LOC_Os03g11430(LOC_Os03g11430.1) | INTRON |