Detailed information of SNP:
|
SNP ID:
sf0305902582(Gbrowse)
Chromosome: chr03 Position: 5902582 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1265 | 96.52% | 3.48% |
| All Indica | 659 | 94.08% | 5.92% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 309 | 94.50% | 5.50% |
| Indica II | 177 | 92.66% | 7.34% |
| Indica Intermediate | 173 | 94.80% | 5.20% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305902582 | T->A | INTERGENIC | None |