Detailed information of SNP:
SNP ID:
sf0305904054(Gbrowse)
Chromosome: chr03 Position: 5904054 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1394 | 97.20% | 2.80% |
All Indica | 799 | 100.00% | 0.00% |
All Japonica | 496 | 100.00% | 0.00% |
Aus | 43 | 34.88% | 65.12% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 93 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 57.14% | 42.86% |
Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0305904054 | T->A | INTERGENIC | None |