Detailed information of SNP:
|
SNP ID:
sf0305904056(Gbrowse)
Chromosome: chr03 Position: 5904056 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 87.24% | 12.76% |
| All Indica | 799 | 86.11% | 13.89% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305904056 | T->A | INTERGENIC | None |