Detailed information of SNP:
|
SNP ID:
sf0305992129(Gbrowse)
Chromosome: chr03 Position: 5992129 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1233 | 83.05% | 16.95% |
| All Indica | 653 | 75.96% | 24.04% |
| All Japonica | 493 | 99.80% | 0.20% |
| Aus | 41 | 19.51% | 80.49% |
| Indica I | 303 | 78.55% | 21.45% |
| Indica II | 190 | 69.47% | 30.53% |
| Indica Intermediate | 160 | 78.75% | 21.25% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305992129 | T->C | INTERGENIC | None |