Detailed information of SNP:
|
SNP ID:
sf0306077536(Gbrowse)
Chromosome: chr03 Position: 6077536 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 56.99% | 43.01% |
| All Indica | 798 | 37.09% | 62.91% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 52.67% | 47.33% |
| Indica II | 213 | 3.76% | 96.24% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306077536 | G->A | INTERGENIC | None |