Detailed information of SNP:
|
SNP ID:
sf0306111666(Gbrowse)
Chromosome: chr03 Position: 6111666 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 75.21% | 24.79% |
| All Indica | 791 | 66.12% | 33.88% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 4.62% | 95.38% |
| Indica I | 372 | 53.49% | 46.51% |
| Indica II | 209 | 88.04% | 11.96% |
| Indica Intermediate | 210 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306111666 | C->T | INTERGENIC | None |