Detailed information of SNP:
|
SNP ID:
sf0306111685(Gbrowse)
Chromosome: chr03 Position: 6111685 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 93.82% | 6.18% |
| All Indica | 773 | 89.78% | 10.22% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 97.03% | 2.97% |
| Indica II | 197 | 70.56% | 29.44% |
| Indica Intermediate | 206 | 95.15% | 4.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306111685 | G->A | INTERGENIC | None |