Detailed information of SNP:
|
SNP ID:
sf0306112744(Gbrowse)
Chromosome: chr03 Position: 6112744 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 96.11% | 3.89% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306112744 | C->T | INTERGENIC | None |