Detailed information of SNP:
|
SNP ID:
sf0306130419(Gbrowse)
Chromosome: chr03 Position: 6130419 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 94.81% | 5.19% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 412 | 84.47% | 15.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 262 | 92.37% | 7.63% |
| Tropical Japonica | 88 | 65.91% | 34.09% |
| Japonica Intermediate | 62 | 77.42% | 22.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306130419 | T->A | INTERGENIC | None |