Detailed information of SNP:
|
SNP ID:
sf0306141106(Gbrowse)
Chromosome: chr03 Position: 6141106 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1328 | 94.73% | 5.27% |
| All Indica | 712 | 90.17% | 9.83% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 341 | 87.98% | 12.02% |
| Indica II | 181 | 96.69% | 3.31% |
| Indica Intermediate | 190 | 87.89% | 12.11% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306141106 | G->A | LOC_Os03g11734(LOC_Os03g11734.3) | INTRON |
| sf0306141106 | G->A | LOC_Os03g11734(LOC_Os03g11734.1) | INTRON |