Detailed information of SNP:
|
SNP ID:
sf0306154502(Gbrowse)
Chromosome: chr03 Position: 6154502 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 93.16% | 6.84% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306154502 | G->A | INTERGENIC | None |