Detailed information of SNP:
|
SNP ID:
sf0306206246(Gbrowse)
Chromosome: chr03 Position: 6206246 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 90.80% | 9.20% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 459 | 73.20% | 26.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 64.57% | 35.43% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 64 | 78.12% | 21.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306206246 | A->G | LOC_Os03g11850(LOC_Os03g11850.1) | Synonymous |