Detailed information of SNP:
|
SNP ID:
sf0306211740(Gbrowse)
Chromosome: chr03 Position: 6211740 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1342 | 52.98% | 47.02% |
| All Indica | 761 | 91.33% | 8.67% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 41 | 7.32% | 92.68% |
| Indica I | 369 | 94.31% | 5.69% |
| Indica II | 187 | 87.70% | 12.30% |
| Indica Intermediate | 205 | 89.27% | 10.73% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 11 | 0.00% | 100.00% |
| Intermediate | 32 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306211740 | C->G | LOC_Os03g11860(LOC_Os03g11860.1) | INTRON |