Detailed information of SNP:
|
SNP ID:
sf0306235476(Gbrowse)
Chromosome: chr03 Position: 6235476 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 57.68% | 42.32% |
| All Indica | 773 | 35.71% | 64.29% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 62 | 3.23% | 96.77% |
| Indica I | 374 | 52.94% | 47.06% |
| Indica II | 188 | 3.19% | 96.81% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306235476 | G->A | LOC_Os03g11900(LOC_Os03g11900.1) | INTRON |