Detailed information of SNP:
|
SNP ID:
sf0306292313(Gbrowse)
Chromosome: chr03 Position: 6292313 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 91.62% | 8.38% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 407 | 73.22% | 26.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 269 | 65.43% | 34.57% |
| Tropical Japonica | 81 | 96.30% | 3.70% |
| Japonica Intermediate | 57 | 77.19% | 22.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306292313 | C->T | LOC_Os03g12010(LOC_Os03g12010.1) | INTRON |
| sf0306292313 | C->T | LOC_Os03g12010(LOC_Os03g12010.4) | UTR_5_PRIME |
| sf0306292313 | C->T | LOC_Os03g12010(LOC_Os03g12010.3) | UTR_5_PRIME |
| sf0306292313 | C->T | LOC_Os03g12010(LOC_Os03g12010.2) | UTR_5_PRIME |