Detailed information of SNP:
|
SNP ID:
sf0306293140(Gbrowse)
Chromosome: chr03 Position: 6293140 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 57.96% | 42.04% |
| All Indica | 797 | 38.77% | 61.23% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 34.49% | 65.51% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 210 | 27.62% | 72.38% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306293140 | T->C | LOC_Os03g12010(LOC_Os03g12010.1) | INTRON |
| sf0306293140 | T->C | LOC_Os03g12010(LOC_Os03g12010.4) | SNPs that introduce initiation codons |
| sf0306293140 | T->C | LOC_Os03g12010(LOC_Os03g12010.3) | INTRON |
| sf0306293140 | T->C | LOC_Os03g12010(LOC_Os03g12010.2) | INTRON |