Detailed information of SNP:
|
SNP ID:
sf0306312857(Gbrowse)
Chromosome: chr03 Position: 6312857 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 65.96% | 34.04% |
| All Indica | 799 | 44.81% | 55.19% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 42.13% | 57.87% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306312857 | T->C | INTERGENIC | None |