Detailed information of SNP:
|
SNP ID:
sf0306313152(Gbrowse)
Chromosome: chr03 Position: 6313152 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 60.55% | 39.45% |
| All Indica | 798 | 42.86% | 57.14% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 38.67% | 61.33% |
| Indica II | 212 | 59.43% | 40.57% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306313152 | T->C | INTERGENIC | None |