Detailed information of SNP:
|
SNP ID:
sf0306321887(Gbrowse)
Chromosome: chr03 Position: 6321887 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 58.65% | 41.35% |
| All Indica | 799 | 39.55% | 60.45% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 35.73% | 64.27% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306321887 | T->C | LOC_Os03g12050(LOC_Os03g12050.1) | UTR_3_PRIME |