Detailed information of SNP:
|
SNP ID:
sf0306323522(Gbrowse)
Chromosome: chr03 Position: 6323522 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1259 | 52.42% | 47.58% |
| All Indica | 751 | 64.98% | 35.02% |
| All Japonica | 390 | 18.72% | 81.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 68.26% | 31.74% |
| Indica II | 189 | 47.62% | 52.38% |
| Indica Intermediate | 206 | 75.24% | 24.76% |
| Temperate Japonica | 254 | 17.72% | 82.28% |
| Tropical Japonica | 83 | 24.10% | 75.90% |
| Japonica Intermediate | 53 | 15.09% | 84.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 48.65% | 51.35% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306323522 | C->T | INTERGENIC | None |