Detailed information of SNP:
|
SNP ID:
sf0306323536(Gbrowse)
Chromosome: chr03 Position: 6323536 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.07% | 41.93% |
| All Indica | 799 | 38.67% | 61.33% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 34.93% | 65.07% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 26.54% | 73.46% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306323536 | G->A | INTERGENIC | None |