Detailed information of SNP:
|
SNP ID:
sf0306329280(Gbrowse)
Chromosome: chr03 Position: 6329280 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1212 | 91.67% | 8.33% |
| All Indica | 718 | 100.00% | 0.00% |
| All Japonica | 378 | 74.07% | 25.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 340 | 100.00% | 0.00% |
| Indica II | 176 | 100.00% | 0.00% |
| Indica Intermediate | 202 | 100.00% | 0.00% |
| Temperate Japonica | 250 | 66.40% | 33.60% |
| Tropical Japonica | 76 | 98.68% | 1.32% |
| Japonica Intermediate | 52 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 91.43% | 8.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306329280 | C->T | LOC_Os03g12064(LOC_Os03g12064.3) | INTRON |
| sf0306329280 | C->T | LOC_Os03g12064(LOC_Os03g12064.6) | INTRON |
| sf0306329280 | C->T | LOC_Os03g12064(LOC_Os03g12064.2) | INTRON |
| sf0306329280 | C->T | LOC_Os03g12064(LOC_Os03g12064.1) | INTRON |