Detailed information of SNP:
|
SNP ID:
sf0306338520(Gbrowse)
Chromosome: chr03 Position: 6338520 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 63.75% | 36.25% |
| All Indica | 798 | 48.50% | 51.50% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 45.33% | 54.67% |
| Indica II | 212 | 62.74% | 37.26% |
| Indica Intermediate | 211 | 39.81% | 60.19% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306338520 | T->C | LOC_Os03g12080(LOC_Os03g12080.1) | INTRON |