Detailed information of SNP:
|
SNP ID:
sf0306340565(Gbrowse)
Chromosome: chr03 Position: 6340565 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 64.95% | 35.05% |
| All Indica | 798 | 41.60% | 58.40% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 38.77% | 61.23% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 28.44% | 71.56% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306340565 | C->T | INTERGENIC | None |