Detailed information of SNP:
|
SNP ID:
sf0306344158(Gbrowse)
Chromosome: chr03 Position: 6344158 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.46% | 41.54% |
| All Indica | 798 | 39.60% | 60.40% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 35.29% | 64.71% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306344158 | A->G | LOC_Os03g12090(LOC_Os03g12090.1) | INTRON |