Detailed information of SNP:
|
SNP ID:
sf0306390946(Gbrowse)
Chromosome: chr03 Position: 6390946 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.42% | 41.58% |
| All Indica | 799 | 39.42% | 60.58% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 35.73% | 64.27% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306390946 | T->A | INTERGENIC | None |