Detailed information of SNP:
|
SNP ID:
sf0306400421(Gbrowse)
Chromosome: chr03 Position: 6400421 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.63% | 41.37% |
| All Indica | 799 | 39.92% | 60.08% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 36.00% | 64.00% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306400421 | G->A | INTERGENIC | None |