Detailed information of SNP:
|
SNP ID:
sf0306408520(Gbrowse)
Chromosome: chr03 Position: 6408520 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 64.66% | 35.34% |
| All Indica | 796 | 48.62% | 51.38% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 45.99% | 54.01% |
| Indica II | 212 | 62.74% | 37.26% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306408520 | C->T | INTERGENIC | None |