Detailed information of SNP:
|
SNP ID:
sf0306412930(Gbrowse)
Chromosome: chr03 Position: 6412930 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 80.74% | 19.26% |
| All Indica | 774 | 74.16% | 25.84% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 61 | 8.20% | 91.80% |
| Indica I | 353 | 56.94% | 43.06% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 208 | 78.37% | 21.63% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306412930 | C->A | INTERGENIC | None |