Detailed information of SNP:
|
SNP ID:
sf0306450367(Gbrowse)
Chromosome: chr03 Position: 6450367 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 59.87% | 40.13% |
| All Indica | 799 | 41.68% | 58.32% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 37.60% | 62.40% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306450367 | T->C | INTERGENIC | None |