Detailed information of SNP:
|
SNP ID:
sf0306547970(Gbrowse)
Chromosome: chr03 Position: 6547970 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 60.81% | 39.19% |
| All Indica | 789 | 40.43% | 59.57% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 65 | 35.38% | 64.62% |
| Indica I | 370 | 60.00% | 40.00% |
| Indica II | 212 | 16.98% | 83.02% |
| Indica Intermediate | 207 | 29.47% | 70.53% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306547970 | C->T | INTERGENIC | None |