Detailed information of SNP:
|
SNP ID:
sf0306621337(Gbrowse)
Chromosome: chr03 Position: 6621337 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 58.58% | 41.42% |
| All Indica | 780 | 37.44% | 62.56% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 367 | 43.87% | 56.13% |
| Indica II | 210 | 29.05% | 70.95% |
| Indica Intermediate | 203 | 34.48% | 65.52% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306621337 | C->G | INTERGENIC | None |