Detailed information of SNP:
|
SNP ID:
sf0306635968(Gbrowse)
Chromosome: chr03 Position: 6635968 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 90.21% | 9.79% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 477 | 72.75% | 27.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 327 | 91.44% | 8.56% |
| Tropical Japonica | 86 | 15.12% | 84.88% |
| Japonica Intermediate | 64 | 54.69% | 45.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306635968 | C->T | LOC_Os03g12530(LOC_Os03g12530.1) | Non-Synonymous SNP |