Detailed information of SNP:
SNP ID:
sf0306687786(Gbrowse)
Chromosome: chr03 Position: 6687786 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1404 | 59.47% | 40.53% |
All Indica | 785 | 92.87% | 7.13% |
All Japonica | 497 | 2.41% | 97.59% |
Aus | 67 | 91.04% | 8.96% |
Indica I | 370 | 92.43% | 7.57% |
Indica II | 208 | 94.71% | 5.29% |
Indica Intermediate | 207 | 91.79% | 8.21% |
Temperate Japonica | 335 | 1.49% | 98.51% |
Tropical Japonica | 94 | 3.19% | 96.81% |
Japonica Intermediate | 68 | 5.88% | 94.12% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0306687786 | T->C | LOC_Os03g12600(LOC_Os03g12600.1) | Non-Synonymous SNP |