Detailed information of SNP:



SNP ID: sf0306687786(Gbrowse)

Chromosome: chr03

Position: 6687786
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1404 59.47% 40.53%
All Indica785 92.87% 7.13%
All Japonica497 2.41% 97.59%
Aus67 91.04% 8.96%
Indica I370 92.43% 7.57%
Indica II208 94.71% 5.29%
Indica Intermediate207 91.79% 8.21%
Temperate Japonica335 1.49% 98.51%
Tropical Japonica94 3.19% 96.81%
Japonica Intermediate68 5.88% 94.12%
Group VI/Aromatic14 78.57% 21.43%
Intermediate41 53.66% 46.34%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0306687786 T->C LOC_Os03g12600(LOC_Os03g12600.1) Non-Synonymous SNP