Detailed information of SNP:
|
SNP ID:
sf0306687786(Gbrowse)
Chromosome: chr03 Position: 6687786 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 59.47% | 40.53% |
| All Indica | 785 | 92.87% | 7.13% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 370 | 92.43% | 7.57% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 207 | 91.79% | 8.21% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306687786 | T->C | LOC_Os03g12600(LOC_Os03g12600.1) | Non-Synonymous SNP |