Detailed information of SNP:



SNP ID: sf0306754101(Gbrowse)

Chromosome: chr03

Position: 6754101
Major allele: T

Minor allele: A

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1410 91.70% 8.30%
All Indica799 100.00% 0.00%
All Japonica489 77.30% 22.70%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica331 90.94% 9.06%
Tropical Japonica91 46.15% 53.85%
Japonica Intermediate67 52.24% 47.76%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 85.37% 14.63%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0306754101 T->A LOC_Os03g12670(LOC_Os03g12670.2) Non-Synonymous SNP
sf0306754101 T->A LOC_Os03g12670(LOC_Os03g12670.3) Non-Synonymous SNP
sf0306754101 T->A LOC_Os03g12670(LOC_Os03g12670.1) Non-Synonymous SNP