Detailed information of SNP:
|
SNP ID:
sf0306754101(Gbrowse)
Chromosome: chr03 Position: 6754101 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 91.70% | 8.30% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 489 | 77.30% | 22.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 90.94% | 9.06% |
| Tropical Japonica | 91 | 46.15% | 53.85% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306754101 | T->A | LOC_Os03g12670(LOC_Os03g12670.2) | Non-Synonymous SNP |
| sf0306754101 | T->A | LOC_Os03g12670(LOC_Os03g12670.3) | Non-Synonymous SNP |
| sf0306754101 | T->A | LOC_Os03g12670(LOC_Os03g12670.1) | Non-Synonymous SNP |