Detailed information of SNP:
|
SNP ID:
sf0306754393(Gbrowse)
Chromosome: chr03 Position: 6754393 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 66.88% | 33.12% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 8.45% | 91.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306754393 | A->G | LOC_Os03g12670(LOC_Os03g12670.2) | UTR_3_PRIME |
| sf0306754393 | A->G | LOC_Os03g12670(LOC_Os03g12670.3) | INTRON |
| sf0306754393 | A->G | LOC_Os03g12670(LOC_Os03g12670.1) | INTRON |