Detailed information of SNP:
|
SNP ID:
sf0306891283(Gbrowse)
Chromosome: chr03 Position: 6891283 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1184 | 86.66% | 13.34% |
| All Indica | 710 | 99.58% | 0.42% |
| All Japonica | 365 | 58.08% | 41.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 100.00% | 0.00% |
| Indica II | 181 | 100.00% | 0.00% |
| Indica Intermediate | 170 | 98.24% | 1.76% |
| Temperate Japonica | 243 | 42.39% | 57.61% |
| Tropical Japonica | 72 | 95.83% | 4.17% |
| Japonica Intermediate | 50 | 80.00% | 20.00% |
| Group VI/Aromatic | 9 | 100.00% | 0.00% |
| Intermediate | 33 | 93.94% | 6.06% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306891283 | C->T | INTERGENIC | None |