Detailed information of SNP:
|
SNP ID:
sf0306897691(Gbrowse)
Chromosome: chr03 Position: 6897691 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 97.98% | 2.02% |
| All Indica | 788 | 99.87% | 0.13% |
| All Japonica | 477 | 94.76% | 5.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 207 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 95.03% | 4.97% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 64 | 87.50% | 12.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306897691 | G->A | INTERGENIC | None |