Detailed information of SNP:
|
SNP ID:
sf0306898666(Gbrowse)
Chromosome: chr03 Position: 6898666 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 98.27% | 1.73% |
| All Indica | 788 | 99.87% | 0.13% |
| All Japonica | 474 | 95.57% | 4.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 207 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 95.64% | 4.36% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 62 | 90.32% | 9.68% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306898666 | G->T | INTERGENIC | None |