Detailed information of SNP:
|
SNP ID:
sf0306908343(Gbrowse)
Chromosome: chr03 Position: 6908343 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1324 | 96.37% | 3.63% |
| All Indica | 705 | 93.19% | 6.81% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 321 | 91.90% | 8.10% |
| Indica II | 190 | 97.89% | 2.11% |
| Indica Intermediate | 194 | 90.72% | 9.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306908343 | C->T | INTERGENIC | None |