Detailed information of SNP:
|
SNP ID:
sf0306922243(Gbrowse)
Chromosome: chr03 Position: 6922243 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 73.82% | 26.18% |
| All Indica | 797 | 64.99% | 35.01% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 209 | 61.72% | 38.28% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306922243 | G->A | INTERGENIC | None |