Detailed information of SNP:
|
SNP ID:
sf0306928216(Gbrowse)
Chromosome: chr03 Position: 6928216 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 88.72% | 11.28% |
| All Indica | 789 | 80.86% | 19.14% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 81.40% | 18.60% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 206 | 82.04% | 17.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0306928216 | C->A | INTERGENIC | None |