Detailed information of SNP:
|
SNP ID:
sf0307008855(Gbrowse)
Chromosome: chr03 Position: 7008855 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 55.08% | 44.92% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307008855 | G->A | LOC_Os03g12980(LOC_Os03g12980.1) | INTRON |