Detailed information of SNP:
|
SNP ID:
sf0307038144(Gbrowse)
Chromosome: chr03 Position: 7038144 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1268 | 54.81% | 45.19% |
| All Indica | 652 | 90.80% | 9.20% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 310 | 88.71% | 11.29% |
| Indica II | 166 | 96.39% | 3.61% |
| Indica Intermediate | 176 | 89.20% | 10.80% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 44.74% | 55.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307038144 | T->C | INTERGENIC | None |