Detailed information of SNP:
|
SNP ID:
sf0307074855(Gbrowse)
Chromosome: chr03 Position: 7074855 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 69.78% | 30.22% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 450 | 11.11% | 88.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 298 | 2.35% | 97.65% |
| Tropical Japonica | 91 | 35.16% | 64.84% |
| Japonica Intermediate | 61 | 18.03% | 81.97% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307074855 | A->T | LOC_Os03g13100(LOC_Os03g13100.1) | INTRON |