Detailed information of SNP:
|
SNP ID:
sf0307268167(Gbrowse)
Chromosome: chr03 Position: 7268167 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 56.63% | 43.37% |
| All Indica | 783 | 93.61% | 6.39% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 365 | 95.07% | 4.93% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307268167 | G->A | INTERGENIC | None |